Loaded via a namespace (and not attached): stats graphics grDevices utils datasets methods base Platform: x86_64-apple-darwin17.0 (64-bit)īLAS: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib nrTP% mutate( Group= case_when(GID %in% nrTP ~ "nrTP", GID %in% c1a ~ "C1a", GID %in% c1b ~ "C1b", GID %in% c2a ~ "C2a", GID %in% c2b ~ "C2b")) %>% nest( TrainTestData= -Trait) %>% left_join(blups_iita %>% nest( augmentTP= -Trait)) cv2do %>% rmarkdown :: paged_table() c1a% unique %>% grep( "c1a"., value = T, ignore.case = T) %>% union(.,blups_nrcri $GID %>% unique %>% grep( "^F"., value = T, ignore.case = T) %>% grep( "c1b"., value = T, ignore.case = T, invert = T)) c1b% unique %>% grep( "c1b"., value = T, ignore.case = T) c2a% unique %>% grep( "C2a"., value = T, ignore.case = T) %>% grep( "NR17"., value = T, ignore.case = T) c2b% unique %>% grep( "C2b"., value = T, ignore.case = T) %>%. Rm( list= ls()) library(tidyverse) library(magrittr) source(here :: here( "code", "gsFunctions.R")) blups_nrcri% select(Trait,blups) %>% unnest(blups) %>% select( - ` std error `) %>% filter(GID %in% rownames(A)) blups_iita %% select(Trait,blups) %>% unnest(blups) %>% select( - ` std error `) %>% filter(GID %in% rownames(A), ! grepl( "TMS13F|TMS14F|TMS15F|2013_|TMS16F|TMS17F|TMS18F",GID)) # Set-up a grouping variable for: # nrTP, C1a, C1b and C2a. Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes. Untracked: output/Kinship_D_NRCRI_2020Oct15.rds Untracked: output/Kinship_D_NRCRI_2020April27.rds Untracked: output/Kinship_DD_NRCRI_2020April27.rds Untracked: output/Kinship_A_NRCRI_2020Oct15.rds Untracked: output/Kinship_A_NRCRI_2020April27.rds Untracked: output/Kinship_AD_NRCRI_2020Oct15.rds Untracked: output/Kinship_AD_NRCRI_2020April27.rds Untracked: output/Kinship_AA_NRCRI_2020April27.rds Untracked: data/chr1_RefPanelAndGSprogeny_ReadyForGP_72719.fam Untracked: data/DatabaseDownload_2020Oct13/ Untracked: CrossValidationFunction_PlusNRCRI_2020GSnotes.gslides Below is the status of the Git repository when the results were generated: workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). See the Past versions tab to see a history of the changes made to the R Markdown and HTML files. The results in this page were generated with repository version c5c0337.
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